Software

Bioinformatics:

• • SPAdes genome assembler: https://cab.spbu.ru/software/spades/

  • Bandage-NG assembly graph viewer: https://github.com/asl/BandageNG

  • PathRacer: aligner for HMMs to assembly graphs https://cab.spbu.ru/software/pathracer/

R packages:

• • Package for Singular Spectrum Analysis (SSA) http://cran.r-project.org/web/packages/Rssa/index.html

  • Bindings to various SVDs: http://cran.r-project.org/web/packages/svd/index.html

Other stuff:

• • Contributions to LLVM: http://www.llvm.org

  • Contributions to Swift: https://www.swift.org

  • Contributions to GGNFS http://sourceforge.net/projects/ggnfs/